5WN1
APE1 exonuclease product complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-22 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.869, 63.528, 90.548 |
Unit cell angles | 90.00, 109.43, 90.00 |
Refinement procedure
Resolution | 24.521 - 2.300 |
R-factor | 0.2161 |
Rwork | 0.213 |
R-free | 0.27000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.010 |
RMSD bond angle | 1.161 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.340 |
High resolution limit [Å] | 2.300 | 6.210 | 2.300 |
Rmerge | 0.110 | 0.067 | 0.746 |
Rmeas | 0.124 | 0.076 | 0.939 |
Rpim | 0.057 | 0.035 | 0.562 |
Number of reflections | 58422 | 1781 | 1728 |
<I/σ(I)> | 11 | ||
Completeness [%] | 99.4 | 99 | 99.4 |
Redundancy | 4.2 | 4.9 | 2.5 |
CC(1/2) | 0.995 | 0.757 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 7% PEG20000, 100 mM sodium citrate, 15% glycerol, 5 mM calcium chloride |