5WM0
Crystal structure of apo wild type peptidylglycine alpha-hydroxylating monooxygenase (PHM) soaked with peptide (peptide not observed)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E DW |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-28 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.099, 65.930, 69.809 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.930 - 2.400 |
R-factor | 0.2039 |
Rwork | 0.200 |
R-free | 0.28110 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 1phm |
RMSD bond length | 0.017 |
RMSD bond angle | 1.933 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 6.510 | 2.440 |
High resolution limit [Å] | 2.400 | 5.170 | 2.400 |
Rmerge | 0.075 | 0.057 | 0.329 |
Rmeas | 0.082 | 0.063 | 0.405 |
Rpim | 0.034 | 0.026 | 0.232 |
Number of reflections | 11068 | 584 | 461 |
<I/σ(I)> | 15.2 | ||
Completeness [%] | 99.2 | 100 | 88.1 |
Redundancy | 5.5 | 5.8 | 2.6 |
CC(1/2) | 0.996 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8.5 | 293 | 19-24% PEG 4000, Tris HCL |