5WI5
2.0 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Streptococcus pneumoniae in Complex with Uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2R)-2-(phosphonooxy)propanoic acid and Magnesium.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 84.243, 80.130, 126.511 |
Unit cell angles | 90.00, 95.76, 90.00 |
Refinement procedure
Resolution | 29.290 - 2.000 |
R-factor | 0.22457 |
Rwork | 0.222 |
R-free | 0.26625 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3sg1 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.518 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MoRDa |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.076 | 0.756 |
Rpim | 0.040 | 0.405 |
Number of reflections | 113220 | 5600 |
<I/σ(I)> | 18.9 | 2.03 |
Completeness [%] | 100.0 | 100 |
Redundancy | 4.5 | 4.4 |
CC(1/2) | 0.697 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | Protein: 8.2 mg/ml, 0.01M Tris HCl (pH 8.3); Screen: PACT (B4), 0.01M MIB buffer (pH 7.0), 25% (w/v) PEG 1500. |