5WEJ
1.95 A resolution structure of Norovirus 3CL protease in complex with a dipeptidyl oxazolidinone-based inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 59.556, 59.556, 357.548 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.293 - 1.950 |
R-factor | 0.1899 |
Rwork | 0.188 |
R-free | 0.22870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t6d |
RMSD bond length | 0.010 |
RMSD bond angle | 1.020 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (dev_2621) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.560 | 49.560 | 2.000 |
High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
Rmerge | 0.134 | 0.031 | 1.825 |
Total number of observations | 542337 | ||
Number of reflections | 29026 | 1994 | |
<I/σ(I)> | 18.1 | ||
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 18.7 | 13.6 | 19.6 |
CC(1/2) | 0.999 | 0.999 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 25% (w/v) PEG 3350, 100 mM bis-Tris, 200 mM lithium suflate |