5W5Q
MAP4K4 in complex with inhibitor compound 12 (N3-methyl-10-(3-methyl-3-(5-methyloxazol-2-yl)but-1-yn-1-yl)-6,7-dihydro-5H-5,7-methanobenzo[c]imidazo[1,2-a]azepine-2,3-dicarboxamide)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-05-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.611, 89.676, 90.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.950 - 2.330 |
R-factor | 0.2108 |
Rwork | 0.209 |
R-free | 0.23550 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.070 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.5) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.650 | 90.650 | 2.600 |
High resolution limit [Å] | 2.330 | 5.200 | 2.330 |
Rmerge | 0.060 | 0.019 | 0.447 |
Rmeas | 0.065 | 0.020 | 0.486 |
Rpim | 0.025 | 0.008 | 0.189 |
Total number of observations | 188764 | 17312 | 52221 |
Number of reflections | 28901 | ||
<I/σ(I)> | 25.5 | 70.7 | 4.5 |
Completeness [%] | 99.9 | 99.8 | 99.8 |
Redundancy | 6.5 | 6.2 | 6.5 |
CC(1/2) | 0.999 | 1.000 | 0.943 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES pH 6.5, 35% PEG 3350 |