5W38
1.80A resolution structure of human IgG3 Fc (N392K)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 64.429, 60.443, 71.396 |
Unit cell angles | 90.00, 109.24, 90.00 |
Refinement procedure
Resolution | 34.729 - 1.800 |
R-factor | 0.1856 |
Rwork | 0.183 |
R-free | 0.22320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dz8 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.020 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.6.1) |
Refinement software | PHENIX (1.11_2568) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.729 | 45.000 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.055 | 0.027 | 0.575 |
Total number of observations | 156654 | ||
Number of reflections | 47374 | ||
<I/σ(I)> | 12.7 | ||
Completeness [%] | 98.4 | 97.8 | 97.7 |
Redundancy | 3.3 | 3.3 | 3.2 |
CC(1/2) | 0.998 | 0.999 | 0.734 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 20% (w/v) PEG 4000, 100 mM sodium citrate/citric acid, 10% (v/v) 2-propanol |