5VQN
E119D mutant of 2009 H1N1 PA Endonuclease in complex with RO-7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-17 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 89.848, 89.848, 133.261 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.470 - 2.002 |
R-factor | 0.1993 |
Rwork | 0.197 |
R-free | 0.24160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5czn |
RMSD bond length | 0.005 |
RMSD bond angle | 0.909 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 4.310 | 2.000 |
Rmerge | 0.089 | 0.056 | 0.856 |
Rmeas | 0.095 | 0.060 | 0.954 |
Rpim | 0.031 | 0.019 | 0.407 |
Number of reflections | 17177 | ||
<I/σ(I)> | 9.3 | ||
Completeness [%] | 91.6 | 99.6 | 53.4 |
Redundancy | 8.5 | 9.1 | 4.6 |
CC(1/2) | 0.998 | 0.701 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.5 | 291 | 0.1 M CAPSO pH 9.5, 1 M Ammonium Sulfate, 50 mM MgCl2, 50 mM MnCl2 |