5VPD
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-III crystal
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-F |
| Synchrotron site | APS |
| Beamline | 21-ID-F |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-10-22 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.9787 |
| Spacegroup name | P 21 21 2 |
| Unit cell lengths | 92.008, 98.051, 50.251 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 44.720 - 2.790 |
| R-factor | 0.2547 |
| Rwork | 0.249 |
| R-free | 0.30020 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5vpa |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.585 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 44.720 | 44.720 | 2.820 |
| High resolution limit [Å] | 2.790 | 7.510 | 2.790 |
| Rmerge | 0.108 | 0.033 | 0.906 |
| Rmeas | 0.116 | 0.037 | 0.977 |
| Rpim | 0.043 | 0.015 | 0.363 |
| Number of reflections | 11778 | ||
| <I/σ(I)> | 7.5 | 2 | |
| Completeness [%] | 99.9 | 98.4 | 100 |
| Redundancy | 7.1 | 6.2 | 7.1 |
| CC(1/2) | 0.999 | 0.902 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 20% (v/v) 2-methyl-2,4-pentanediol (MPD), 0.1 M NaCl, 50 mM sodium cacodylate pH 6 and 10 mM spermine |






