Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VL0

horse liver alcohol dehydrogenase complexed with NADH and N-benzyformamide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyCCD
Collection date2006-10-19
DetectorADSC QUANTUM 210
Wavelength(s)1.000
Spacegroup nameP 1 21 1
Unit cell lengths50.160, 180.290, 86.920
Unit cell angles90.00, 106.18, 90.00
Refinement procedure
Resolution19.950 - 1.200
R-factor0.1586
Rwork0.158
R-free0.19850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1p1r
RMSD bond length0.019
RMSD bond angle2.061
Data reduction softwared*TREK
Data scaling softwared*TREK (9.9.9.8L)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.95019.9501.240
High resolution limit [Å]1.2002.5801.200
Rmerge0.0880.0660.513
Rmeas0.0940.0700.576
Total number of observations2278017
Number of reflections36513923988
<I/σ(I)>8.320.81.7
Completeness [%]79.498.959.5
Redundancy6.198.64.34
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICRODIALYSIS727810 mg/ml enzyme dialyzed against 50 mM ammonium N-[tris(hydroxylmethyl)methyl]2-aminoethane sulfonate (pH 6.7 at 25 deg C) with 1 mM NADH and 10 mM N-benzylformamide as the concentration of 2-methyl-2,4-pentanediol was raised to 25 %. Crystas was mounted on a fiber loop and flash vitrified by plunging it into liquid N2.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon