5VKK
Crystal structure of Fab fragment of anti-CD22 Epratuzumab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-07 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97949 |
Spacegroup name | P 1 |
Unit cell lengths | 56.712, 61.564, 65.285 |
Unit cell angles | 71.81, 81.07, 75.95 |
Refinement procedure
Resolution | 49.671 - 2.014 |
R-factor | 0.2131 |
Rwork | 0.212 |
R-free | 0.23660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ani |
RMSD bond length | 0.004 |
RMSD bond angle | 0.833 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.671 | 49.671 | 2.080 |
High resolution limit [Å] | 2.014 | 7.780 | 2.014 |
Rmerge | 0.145 | 0.028 | 0.756 |
Rmeas | 0.177 | 0.035 | 0.928 |
Number of reflections | 52026 | 908 | 5119 |
<I/σ(I)> | 6.62 | 30.19 | 1.71 |
Completeness [%] | 92.3 | 97.5 | 96 |
Redundancy | 2.957 | 2.907 | 2.979 |
CC(1/2) | 0.993 | 0.998 | 0.626 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 85 mM Tris, pH 8.5, 25.5% PEG 4000 (w/v), 170 mM sodium acetate and 15% glycerol |