Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VKK

Crystal structure of Fab fragment of anti-CD22 Epratuzumab

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2015-08-07
DetectorRAYONIX MX-300
Wavelength(s)0.97949
Spacegroup nameP 1
Unit cell lengths56.712, 61.564, 65.285
Unit cell angles71.81, 81.07, 75.95
Refinement procedure
Resolution49.671 - 2.014
R-factor0.2131
Rwork0.212
R-free0.23660
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ani
RMSD bond length0.004
RMSD bond angle0.833
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.67149.6712.080
High resolution limit [Å]2.0147.7802.014
Rmerge0.1450.0280.756
Rmeas0.1770.0350.928
Number of reflections520269085119
<I/σ(I)>6.6230.191.71
Completeness [%]92.397.596
Redundancy2.9572.9072.979
CC(1/2)0.9930.9980.626
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION29385 mM Tris, pH 8.5, 25.5% PEG 4000 (w/v), 170 mM sodium acetate and 15% glycerol

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon