5VDK
Crystal structure of human WEE2 kinase domain in complex with MK1775
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2015-05-14 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 32 |
Unit cell lengths | 68.810, 68.810, 58.040 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 18.794 - 2.700 |
R-factor | 0.2281 |
Rwork | 0.225 |
R-free | 0.28430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1x8b |
RMSD bond length | 0.003 |
RMSD bond angle | 0.704 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 18.794 | 18.794 | 2.770 |
High resolution limit [Å] | 2.700 | 12.080 | 2.700 |
Rmerge | 0.097 | 0.051 | 0.570 |
Rmeas | 0.109 | 0.057 | 0.646 |
Number of reflections | 8422 | 72 | 640 |
<I/σ(I)> | 12.39 | 23.85 | 3.4 |
Completeness [%] | 99.7 | 75.8 | 100 |
Redundancy | 4.374 | 4.319 | 4.439 |
CC(1/2) | 0.995 | 0.993 | 0.829 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 291 | 14 MG/ML WEE2, 25 mM TRIS PH 8.0, 1 mM DTT, 0.2 M ammonium phosphate monobasic, 1.5 mM MK1775 |