5VC6
crystal structure of human WEE1 kinase domain in complex with PHA-848125
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2016-11-10 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.430, 44.920, 64.800 |
Unit cell angles | 90.00, 102.91, 90.00 |
Refinement procedure
Resolution | 63.163 - 2.000 |
Rwork | 0.220 |
R-free | 0.26450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v5y |
RMSD bond length | 0.007 |
RMSD bond angle | 1.014 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.163 | 63.163 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.045 | 0.022 | 0.265 |
Rmeas | 0.053 | 0.026 | 0.309 |
Number of reflections | 18665 | 203 | 1378 |
<I/σ(I)> | 20.2 | 48.36 | 5.62 |
Completeness [%] | 96.3 | 84.2 | 95.3 |
Redundancy | 3.716 | 3.31 | 3.747 |
CC(1/2) | 0.999 | 0.999 | 0.906 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 291 | 5.0 MG/ML WEE1, 25 mM Na/K phosphate, 1 mM DTT, 0.05 M ammonium sulfate, 0.05 M Bis-tris (pH 5.5), 7.5 % PEG 3350, 1 mM PHA-848125 |