5VAT
Haemophilus influenzae LpoA: Monoclinic form (Mon2) with 2 molecules per a.u.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 125 |
Detector technology | CCD |
Collection date | 2009-10-08 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 1.07806 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 84.935, 72.695, 120.572 |
Unit cell angles | 90.00, 94.42, 90.00 |
Refinement procedure
Resolution | 42.341 - 2.600 |
R-factor | 0.2247 |
Rwork | 0.223 |
R-free | 0.25680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ckm 4p29 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.542 |
Data reduction software | HKL-2000 (0.98) |
Data scaling software | HKL-2000 (0.98) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 46.400 | 2.530 |
High resolution limit [Å] | 2.490 | 6.510 | 2.490 |
Rmerge | 0.087 | 0.059 | 0.513 |
Rmeas | 0.107 | 0.071 | 0.647 |
Rpim | 0.061 | 0.040 | 0.389 |
Number of reflections | 45736 | 2580 | 1887 |
<I/σ(I)> | 11.9 | ||
Completeness [%] | 87.1 | 85.1 | 65.1 |
Redundancy | 2.66 | 2.8 | 2.2 |
CC(1/2) | 0.900 | 0.988 | 0.635 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | One microliter of concentrated protein (33 mg/ml in 150 mm NaCl, 50 mm Tris-HCl, ph 8.0) and one microliter precipitant (8% polyethylene glycol 4000, 0.1 m sodium acetate trihydrate, ph 4.6) and 0.2 microliter 30% xylitol. Cryoprotectant: precipitant solution containing 15% glycerol. |