5V8X
Mutant Structures of Streptococcus Agalactiae GBS Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-12 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.104, 107.805, 91.432 |
Unit cell angles | 90.00, 105.73, 90.00 |
Refinement procedure
Resolution | 46.800 - 2.950 |
R-factor | 0.2242 |
Rwork | 0.222 |
R-free | 0.27030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jy6 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.307 |
Data reduction software | XDS (Oct. 2015) |
Data scaling software | SCALA (0.5.17) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 107.800 | 3.130 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.125 | 1.560 |
Rmeas | 0.141 | 1.742 |
Rpim | 0.063 | 0.764 |
Number of reflections | 26679 | |
<I/σ(I)> | 9.5 | |
Completeness [%] | 99.3 | 99.8 |
Redundancy | 4.8 | 4.9 |
CC(1/2) | 0.996 | 0.527 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 295 | 20-27% PEG 4000, 0.1 M Mes pH 6.5 |