5V27
2.35 angstrom crystal structure of P97V 3-hydroxyanthranilate-3,4-dioxygenase from Cupriavidus metallidurans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-07-12 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 1 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 58.032, 58.032, 231.868 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.973 - 2.352 |
R-factor | 0.2125 |
Rwork | 0.209 |
R-free | 0.27440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yfu |
RMSD bond length | 0.007 |
RMSD bond angle | 0.820 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.430 |
High resolution limit [Å] | 2.350 | 5.060 | 2.350 |
Rmerge | 0.126 | 0.062 | 0.546 |
Rmeas | 0.129 | 0.064 | 0.556 |
Rpim | 0.026 | 0.014 | 0.106 |
Number of reflections | 10362 | ||
<I/σ(I)> | 5.6 | ||
Completeness [%] | 98.7 | 98 | 100 |
Redundancy | 27.6 | 21.3 | 24.8 |
CC(1/2) | 0.998 | 0.990 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 289 | 100 mM Tris-HCl, 200 mM MgCl2, 20% PEG 8000, and 1 mM DTT, pH 8.0 |