5UZA
Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.55 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 48.985, 151.575, 24.735 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.611 - 2.220 |
R-factor | 0.217 |
Rwork | 0.215 |
R-free | 0.25090 |
Structure solution method | SAD |
RMSD bond length | 0.005 |
RMSD bond angle | 0.386 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SHELXD |
Refinement software | PHENIX (dev_2447) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.611 | 50.000 | 2.300 |
High resolution limit [Å] | 2.220 | 4.780 | 2.220 |
Rmerge | 0.048 | 0.029 | 0.658 |
Rmeas | 0.051 | 0.031 | 0.729 |
Rpim | 0.017 | 0.011 | 0.307 |
Number of reflections | 17080 | ||
<I/σ(I)> | 12 | ||
Completeness [%] | 99.7 | 98.1 | 99.3 |
Redundancy | 8.5 | 8 | 5.2 |
CC(1/2) | 0.998 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 50mM Tris-HCl (pH:8.5), 100mM KCl, 10mM MgCl2 and 30% Polyethylene Glycol 400 |