5UVD
Crystal structure of an antigenic nucleotidyltransferase-like protein from Paracoccidioides brasiliensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-05-24 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.4587 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.649, 51.105, 121.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.090 - 1.860 |
R-factor | 0.16216 |
Rwork | 0.159 |
R-free | 0.22168 |
Structure solution method | SAD |
RMSD bond length | 0.020 |
RMSD bond angle | 1.878 |
Data scaling software | XDS (January 10, 2014 BUILT=20140307) |
Phasing software | AutoSol (1.8.2) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.090 | 1.970 | 1.710 |
High resolution limit [Å] | 1.860 | 1.860 | 1.680 |
Rmerge | 0.088 | 0.409 | 0.172 |
Number of reflections | 17894 | 2613 | 1586 |
<I/σ(I)> | 19.2 | 4.2 | 3.7 |
Completeness [%] | 97.9 | 89.9 | 68.9 |
Redundancy | 9.5 | 5.5 | 1.7 |
CC(1/2) | 0.998 | 0.954 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.25 M MgCl2, 25% PEG 4000, 0.1 M Tris-HCl pH 7.0 - 8,0 | |
2 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.25 M MgCl2, 25% PEG 4000, 0.1 M Tris-HCl pH 7.0 - 8,0 Crystal was incubated in a cryo-soaking solution containing 100 mM NaI and 10% (v/v) ethylene glycol |