5UR6
PYR1 bound to the rationally designed agonist cyanabactin
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2016-11-30 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.54178 |
| Spacegroup name | F 2 2 2 |
| Unit cell lengths | 83.436, 88.222, 112.072 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 34.660 - 1.631 |
| R-factor | 0.1894 |
| Rwork | 0.187 |
| R-free | 0.21880 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PYR1 (PDB ID 5UR4) |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.813 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 (708c) |
| Phasing software | PHASER (2.5.5) |
| Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.660 |
| High resolution limit [Å] | 1.630 | 4.420 | 1.630 |
| Rmerge | 0.052 | 0.043 | 0.117 |
| Rmeas | 0.057 | 0.046 | 0.127 |
| Rpim | 0.022 | 0.018 | 0.049 |
| Number of reflections | 25599 | ||
| <I/σ(I)> | 63 | ||
| Completeness [%] | 99.1 | 98.6 | 100 |
| Redundancy | 6.7 | 7 | 6.6 |
| CC(1/2) | 0.998 | 0.987 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 302 | 0.1 M Bis-tris propane, 2 M ammonium sulphate. Cryoprotected in perfluoropolyether cryo-oil |






