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5UR5

PYR1 bound to the rationally designed agonist 4m

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2016-12-01
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54178
Spacegroup nameF 2 2 2
Unit cell lengths82.605, 88.220, 112.167
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.671 - 1.930
R-factor0.1566
Rwork0.153
R-free0.18600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PYR1 (PDB ID 5UR4)
RMSD bond length0.006
RMSD bond angle0.762
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000 (708c)
Phasing softwarePHASER (2.5.5)
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.960
High resolution limit [Å]1.9305.2401.930
Rmerge0.0540.0420.135
Rmeas0.0590.0450.146
Rpim0.0220.0180.055
Number of reflections15572
<I/σ(I)>28
Completeness [%]100.099.899.5
Redundancy7.26.96.8
CC(1/2)0.9980.988
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP53020.1 M sodium acetate, 1.5 M ammonium sulfate. Cryoported in well solution plus 20% w/v glycerol

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