5UR5
PYR1 bound to the rationally designed agonist 4m
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2016-12-01 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.54178 |
| Spacegroup name | F 2 2 2 |
| Unit cell lengths | 82.605, 88.220, 112.167 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 34.671 - 1.930 |
| R-factor | 0.1566 |
| Rwork | 0.153 |
| R-free | 0.18600 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PYR1 (PDB ID 5UR4) |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.762 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 (708c) |
| Phasing software | PHASER (2.5.5) |
| Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.960 |
| High resolution limit [Å] | 1.930 | 5.240 | 1.930 |
| Rmerge | 0.054 | 0.042 | 0.135 |
| Rmeas | 0.059 | 0.045 | 0.146 |
| Rpim | 0.022 | 0.018 | 0.055 |
| Number of reflections | 15572 | ||
| <I/σ(I)> | 28 | ||
| Completeness [%] | 100.0 | 99.8 | 99.5 |
| Redundancy | 7.2 | 6.9 | 6.8 |
| CC(1/2) | 0.998 | 0.988 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5 | 302 | 0.1 M sodium acetate, 1.5 M ammonium sulfate. Cryoported in well solution plus 20% w/v glycerol |






