5ULJ
Crystal structure of Scheffersomyces stipitis Rai1 in complex with (3'-NADP)+ and calcium ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-23 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 89.350, 102.476, 101.194 |
Unit cell angles | 90.00, 112.85, 90.00 |
Refinement procedure
Resolution | 49.679 - 1.911 |
R-factor | 0.2083 |
Rwork | 0.208 |
R-free | 0.25420 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.686 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.980 |
High resolution limit [Å] | 1.910 | 4.110 | 1.910 |
Rmerge | 0.083 | 0.061 | 0.483 |
Rmeas | 0.097 | 0.071 | 0.593 |
Rpim | 0.050 | 0.036 | 0.338 |
Total number of observations | 470441 | ||
Number of reflections | 129210 | ||
<I/σ(I)> | 10.7 | ||
Completeness [%] | 99.6 | 99.7 | 97.9 |
Redundancy | 3.6 | 3.8 | 3 |
CC(1/2) | 0.992 | 0.722 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 15% (w/v) PEG 3350 and 0.2 M NH4Cl |