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5UL4

Structure of Cobalamin-dependent S-adenosylmethionine radical enzyme OxsB with aqua-cobalamin and S-adenosylmethionine bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2014-11-22
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9791
Spacegroup nameP 21 21 21
Unit cell lengths89.360, 99.600, 121.440
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.844 - 1.850
R-factor0.1951
Rwork0.192
R-free0.23130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)OxsB with aqua-cobalamin bound
RMSD bond length0.009
RMSD bond angle1.214
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.11.1_2575: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.8441.920
High resolution limit [Å]1.8501.850
Rmerge0.0520.590
Number of reflections931599182
<I/σ(I)>23.11.9
Completeness [%]99.299.2
Redundancy3.73.7
CC(1/2)0.770
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.1 M MES (6.5), 6% w/v PEG 3350, 20-24% v/v ethylene glycol

220113

PDB entries from 2024-05-22

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