5U9N
Second Bromodomain of cdg4_1340 from Cryptosporidium parvum, complexed with bromosporine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-25 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97600 |
Spacegroup name | F 2 2 2 |
Unit cell lengths | 62.119, 186.124, 195.176 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.540 - 2.400 |
R-factor | 0.226 |
Rwork | 0.225 |
R-free | 0.25600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4py6 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.610 |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.670 | 33.670 | 2.490 |
High resolution limit [Å] | 2.400 | 8.970 | 2.400 |
Rmerge | 0.100 | 0.072 | 0.639 |
Rmeas | 0.108 | ||
Rpim | 0.041 | ||
Total number of observations | 159515 | ||
Number of reflections | 22425 | ||
<I/σ(I)> | 18 | ||
Completeness [%] | 99.8 | 96.8 | 98.6 |
Redundancy | 7.1 | 6.2 | 6.9 |
CC(1/2) | 0.996 | 0.995 | 0.800 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | The protein was crystallized at 293 K in 2.5M ammonium sulfate, 0.1 M bis-tris propane pH 7.0. Bromosporine (ethyl (3-methyl-6-{4-methyl-3-[(methylsulfonyl)amino]phenyl}[1,2,4]triazolo[4,3- b]pyridazin-8-yl)carbamate) was added (final concentration of 1 mM)directly to the concentrated protein immediately prior to setting up the crystallization plate |