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5U1Y

Crystal structure of the ATP-gated P2X7 ion channel bound to allosteric antagonist GW791343

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-06-24
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9782
Spacegroup nameI 21 3
Unit cell lengths169.704, 169.704, 169.704
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.989 - 3.300
R-factor0.2428
Rwork0.239
R-free0.27100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)A740003 bound P2X7
RMSD bond length0.004
RMSD bond angle0.672
Data scaling softwareAimless (0.5.1)
Phasing softwarePHASER
Refinement softwarePHENIX (1.10_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.99048.9903.560
High resolution limit [Å]3.3008.7303.300
Rmerge0.1240.0741.339
Rmeas0.131
Rpim0.042
Total number of observations124999
Number of reflections12394
<I/σ(I)>12.4
Completeness [%]99.999.499.8
Redundancy10.19.510.2
CC(1/2)0.9970.9970.690
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277100 mM HEPES or Tris (pH 6.0-7.5), 100 mM NaCl, 4% ethylene glycol, 15% glycerol, 27-32% PEG-400 or 31-36% PEG-300, 0.1 mg/mL lipid mixture (60% POPE, 20% POPG, and 20% cholesterol), and 1 mM GW791343

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PDB entries from 2024-05-15

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