5U1I
Crystal structure of a methyltransferase involved in the biosynthesis of gentamicin in complex with the methylated Kanamycin B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2016-10-19 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.45 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.045, 70.052, 86.008 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.896 - 1.932 |
R-factor | 0.1787 |
Rwork | 0.176 |
R-free | 0.22430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5u4t |
RMSD bond length | 0.007 |
RMSD bond angle | 0.994 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 43.896 |
High resolution limit [Å] | 1.932 |
Rmerge | 0.023 |
Number of reflections | 23107 |
<I/σ(I)> | 21.76 |
Completeness [%] | 97.3 |
Redundancy | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | Calcium chloride, Hepes pH 8, Peg 6000 |