5TZD
Structure of the WT S. venezulae BldD-(CTD-c-di-GMP)2 assembly intermediate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-06 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.0 |
Spacegroup name | P 61 |
Unit cell lengths | 108.300, 108.300, 49.660 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.888 - 1.749 |
R-factor | 0.2151 |
Rwork | 0.207 |
R-free | 0.23960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5khd |
RMSD bond length | 0.024 |
RMSD bond angle | 2.390 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.6.4_486) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.827 | 1.940 |
High resolution limit [Å] | 1.749 | 1.749 |
Rmerge | 0.112 | |
Number of reflections | 31775 | |
<I/σ(I)> | 17 | 5.1 |
Completeness [%] | 94.7 | 79.5 |
Redundancy | 4.1 | 2.1 |
CC(1/2) | 0.997 | 0.978 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 30% PEG 1500, 100 mM sodium acetate, pH 5.0 |