5TPB
Binding domain of BoNT/A complexed with ganglioside variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-15 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.91841 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.515, 104.330, 69.406 |
Unit cell angles | 90.00, 115.97, 90.00 |
Refinement procedure
Resolution | 39.050 - 2.600 |
R-factor | 0.223 |
Rwork | 0.222 |
R-free | 0.23960 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.210 |
Data scaling software | SCALA (0.2.17) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.050 | 39.050 | 2.720 |
High resolution limit [Å] | 2.600 | 9.010 | 2.600 |
Rmerge | 0.116 | 0.048 | 0.577 |
Rmeas | 0.138 | 0.058 | 0.694 |
Rpim | 0.075 | 0.032 | 0.381 |
Total number of observations | 86881 | 2038 | 10122 |
Number of reflections | 25875 | ||
<I/σ(I)> | 6.2 | 14.6 | 1.7 |
Completeness [%] | 99.8 | 98.6 | 99.7 |
Redundancy | 3.4 | 3.2 | 3.2 |
CC(1/2) | 0.991 | 0.995 | 0.686 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 20% PEG3350, 0.2 M potassium thiocyanate, 0.1 M BisTris propane pH 6.5 |