5TJR
X-ray Crystal structure of a methylmalonate semialdehyde dehydrogenase from Pseudomonas sp. AAC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-26 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 115.891, 156.631, 192.246 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.000 - 2.950 |
R-factor | 0.21417 |
Rwork | 0.212 |
R-free | 0.24862 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zz7 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.686 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.600 | 3.010 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.178 | 1.607 |
Number of reflections | 74332 | |
<I/σ(I)> | 11.5 | 2 |
Completeness [%] | 99.9 | 100 |
Redundancy | 14.7 | 15 |
CC(1/2) | 0.998 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 281 | Protein at 5 mg/mL with added acetyl-CoA; crystal conditions were 100 mM bis-tris propane at pH 7.6, 24% PEG 3350, 210 mM trisodium citr ate in 150 plus 150 nL drops. |