5TIJ
Structure of Human Enolase 2 with ((3S,5S)-1,5-dihydroxy-3-methyl-2-oxopyrrolidin-3-yl)phosphonate (purified enantiomer)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.11587 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.250, 108.380, 117.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.014 - 2.634 |
R-factor | 0.2094 |
Rwork | 0.206 |
R-free | 0.26700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zcw |
RMSD bond length | 0.005 |
RMSD bond angle | 0.451 |
Data reduction software | iMOSFLM (7.1.0) |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (10.1-2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.014 | 59.010 | 2.760 |
High resolution limit [Å] | 2.630 | 8.740 | 2.630 |
Rmerge | 0.110 | 0.084 | 0.290 |
Number of reflections | 26354 | ||
<I/σ(I)> | 11.7 | ||
Completeness [%] | 99.6 | 99.7 | 98.2 |
Redundancy | 6.5 | 6.2 | 6.1 |
CC(1/2) | 0.992 | 0.993 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 100 mM Bis-Tris, pH 6.5, 200 mM ammonium acetate, 20% w/v PEG3350, soak in solution containing 100 mM Bis-Tris, pH 6.5, 200 mM ammonium acetate, 35% w/v PEG3350, 2 mM compound |