5T6U
Crystal structure of mouse cathepsin K at 2.9 Angstroms resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 37.920, 43.260, 133.970 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.260 - 2.900 |
R-factor | 0.2058 |
Rwork | 0.205 |
R-free | 0.22060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4x6h |
RMSD bond length | 0.002 |
RMSD bond angle | 0.611 |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.260 | 3.060 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.122 | 0.320 |
Number of reflections | 5243 | |
<I/σ(I)> | 10.66 | 5.3 |
Completeness [%] | 99.5 | 99.9 |
Redundancy | 5.4 | 5.8 |
CC(1/2) | 0.990 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 298 | 0.1 M sodium phosphate pH 6.2 25% (v/v) 1,2-propanediol 10% (v/v) glycerol |