5SLM
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z28290384
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.828, 67.311, 138.691 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.350 - 2.050 |
R-factor | 0.2606 |
Rwork | 0.258 |
R-free | 0.30720 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 7qgi |
RMSD bond length | 0.008 |
RMSD bond angle | 0.940 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 138.690 | 138.690 | 2.110 |
High resolution limit [Å] | 2.050 | 8.940 | 2.050 |
Rmerge | 0.311 | 0.056 | 3.430 |
Rmeas | 0.337 | 0.063 | 3.702 |
Rpim | 0.128 | 0.027 | 1.384 |
Total number of observations | 276096 | 3248 | 22107 |
Number of reflections | 40677 | ||
<I/σ(I)> | 5 | 32.6 | 0.5 |
Completeness [%] | 100.0 | 99.9 | 99.7 |
Redundancy | 6.8 | 5.5 | 7.1 |
CC(1/2) | 0.986 | 0.961 | 0.476 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 278 | 1.26 M sodium phosphate monobasic, 0.14 M potassium phosphate dibasic |