5SLK
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1354370680
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-02-03 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91788 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 67.596, 67.536, 138.752 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 69.380 - 2.210 |
| R-factor | 0.2235 |
| Rwork | 0.220 |
| R-free | 0.28460 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 7qgi |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.448 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.7) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 138.760 | 138.760 | 2.280 |
| High resolution limit [Å] | 2.210 | 9.110 | 2.210 |
| Rmerge | 0.274 | 0.058 | 3.555 |
| Rmeas | 0.297 | 0.065 | 3.840 |
| Rpim | 0.113 | 0.028 | 1.440 |
| Total number of observations | 219213 | 3082 | 19423 |
| Number of reflections | 32615 | ||
| <I/σ(I)> | 5.2 | 30.1 | 0.4 |
| Completeness [%] | 99.9 | 99.9 | 98.8 |
| Redundancy | 6.7 | 5.5 | 7 |
| CC(1/2) | 0.988 | 0.980 | 0.292 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 278 | 1.26 M sodium phosphate monobasic, 0.14 M potassium phosphate dibasic |
