5SKX
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z126932614
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.652, 67.696, 138.531 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.270 - 2.342 |
R-factor | 0.1876 |
Rwork | 0.183 |
R-free | 0.27510 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 7qgi |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.266 | 69.266 | 2.654 |
High resolution limit [Å] | 2.342 | 7.987 | 2.342 |
Rmeas | 0.226 | 0.053 | 1.291 |
Rpim | 0.088 | 0.022 | 0.542 |
Total number of observations | 99375 | 4323 | 4305 |
Number of reflections | 15683 | ||
<I/σ(I)> | 7.2 | 20.9 | 1.4 |
Completeness [%] | 92.6 | 99.4 | 72.3 |
Redundancy | 6.3 | 5.5 | 5.5 |
CC(1/2) | 0.993 | 0.998 | 0.598 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 278 | 1.26 M sodium phosphate monobasic, 0.14 M potassium phosphate dibasic |