5SJ4
CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 10 IN COMPLEX WITH c1(ccccc1)c2cn(C)c(n2)CCC3=Nc4c(C(N3)=O)cnn4C, micromolar IC50=0.04979
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2010-11-29 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.000000 |
Spacegroup name | H 3 |
Unit cell lengths | 135.140, 135.140, 235.843 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.480 - 2.770 |
R-factor | 0.1991 |
Rwork | 0.195 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.013 |
RMSD bond angle | 2.176 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.480 | 43.480 | 2.840 |
High resolution limit [Å] | 2.770 | 12.390 | 2.770 |
Rmerge | 0.133 | 0.048 | 1.807 |
Rmeas | 0.149 | 0.054 | 2.047 |
Total number of observations | 195871 | ||
Number of reflections | 40542 | 442 | 3013 |
<I/σ(I)> | 8.85 | 29.32 | 1 |
Completeness [%] | 99.2 | 97.8 | 99.4 |
Redundancy | 4.831 | 5.113 | 4.493 |
CC(1/2) | 0.995 | 0.996 | 0.379 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | 5-20 mg/mL protein in 25mM HEPES/NaOH pH7.5, 150mM NaCl, 50mM BME mixed 1:1 with reservoir 0.1M HEPES/NaOH pH7.5, 30% PEG550MME, 50mM MgCl2 |