5SBE
Tubulin-maytansinoid-5c-complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-23 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00003 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.118, 158.404, 181.377 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.060 - 2.750 |
R-factor | 0.1934 |
Rwork | 0.192 |
R-free | 0.22970 |
Structure solution method | DIFFERENCE FOURIER |
Starting model (for MR) | 5lxt |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.19.1_4122) |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.060 | 48.060 | 2.820 |
High resolution limit [Å] | 2.750 | 12.300 | 2.750 |
Rmerge | 0.346 | 0.046 | 3.106 |
Rmeas | 0.360 | 0.049 | 3.229 |
Total number of observations | 1072044 | ||
Number of reflections | 79317 | 988 | 5775 |
<I/σ(I)> | 9.81 | 44.72 | 0.91 |
Completeness [%] | 99.9 | 97.6 | 100 |
Redundancy | 13.516 | 12.004 | 13.407 |
CC(1/2) | 0.993 | 0.999 | 0.337 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 3% PEG 4K, 4% glycerol, 30 mM MgCl2, 30 mM CaCl2, 0.1 M MES/Imidazole, 5 mM L-tyrosine |