5SBA
Tubulin-maytansinoid-4b-complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-23 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00003 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.174, 156.450, 180.827 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.490 - 2.250 |
R-factor | 0.186 |
Rwork | 0.184 |
R-free | 0.22690 |
Structure solution method | DIFFERENCE FOURIER |
Starting model (for MR) | 5lxt |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.19.1_4122) |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.490 | 49.490 | 2.310 |
High resolution limit [Å] | 2.250 | 10.060 | 2.250 |
Rmerge | 0.192 | 0.038 | 2.974 |
Rmeas | 0.200 | 0.040 | 3.097 |
Total number of observations | 1918037 | ||
Number of reflections | 140740 | 1729 | 10289 |
<I/σ(I)> | 11.85 | 56.31 | 0.84 |
Completeness [%] | 100.0 | 98.8 | 100 |
Redundancy | 13.628 | 12.699 | 12.873 |
CC(1/2) | 0.998 | 0.999 | 0.343 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 3% PEG 4K, 4% glycerol, 30 mM MgCl2, 30 mM CaCl2, 0.1 M MES/Imidazole, 5 mM L-tyrosine |