5SB9
Tubulin-maytansinoid-4a-complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-16 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.539, 156.717, 181.697 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.920 - 2.500 |
R-factor | 0.1959 |
Rwork | 0.194 |
R-free | 0.22820 |
Structure solution method | DIFFERENCE FOURIER |
Starting model (for MR) | 5lxt |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (1.19.1_4122) |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.920 | 47.920 | 2.560 |
High resolution limit [Å] | 2.500 | 11.180 | 2.500 |
Rmerge | 0.212 | 0.043 | 2.412 |
Rmeas | 0.220 | 0.044 | 2.503 |
Total number of observations | 1413808 | ||
Number of reflections | 103685 | 1287 | 7576 |
<I/σ(I)> | 11.52 | 49.13 | 1.14 |
Completeness [%] | 100.0 | 98.4 | 100 |
Redundancy | 13.636 | 12.448 | 14.111 |
CC(1/2) | 0.998 | 0.998 | 0.469 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 3% PEG 4K, 4% glycerol, 30 mM MgCl2, 30 mM CaCl2, 0.1 M MES/Imidazole, 5 mM L-tyrosine |