5S9X
PanDDA analysis group deposition -- Crystal Structure of Trypanosoma brucei Trypanothione reductase in complex with Z1899842917
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 79.980, 109.240, 112.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 78.250 - 1.840 |
R-factor | 0.1967 |
Rwork | 0.195 |
R-free | 0.23810 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6rb5 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.483 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.250 | 78.250 | 1.890 |
High resolution limit [Å] | 1.840 | 8.230 | 1.840 |
Rmerge | 0.099 | 0.032 | 2.552 |
Rmeas | 0.108 | 0.035 | 2.763 |
Rpim | 0.042 | 0.014 | 1.054 |
Total number of observations | 571871 | 7048 | 42736 |
Number of reflections | 85835 | ||
<I/σ(I)> | 10.8 | 39.9 | 0.8 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 6.7 | 6.4 | 6.8 |
CC(1/2) | 0.998 | 0.997 | 0.297 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | MPD 22%, PEG 3350 14%, imidazole 40 mM pH 8 |