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5S9L

AUTOTAXIN, 4-[3-Oxo-3-(2-oxo-2,3-dihydro-benzooxazol-6-yl)-propyl]-piperazine-1-carboxylic acid 3,5-dichloro-benzyl ester, 1.90A, P212121, Rfree=19.1%

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyCCD
Collection date2020-02-02
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.99983
Spacegroup nameP 21 21 21
Unit cell lengths83.543, 91.259, 118.405
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution61.700 - 1.900
R-factor0.1598
Rwork0.158
R-free0.19100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)in-house model
RMSD bond length0.010
RMSD bond angle1.643
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]61.70061.7001.950
High resolution limit [Å]1.9008.5001.900
Rmerge0.0530.0240.367
Rmeas0.0570.0250.413
Total number of observations508533
Number of reflections715419254893
<I/σ(I)>21.1252.733.62
Completeness [%]99.499.293.2
Redundancy7.116.7854.78
CC(1/2)0.9991.0000.891
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.529315.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL

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PDB entries from 2026-03-25

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