5S8H
XChem group deposition -- Crystal Structure of the second bromodomain of pleckstrin homology domain interacting protein (PHIP) in complex with N00964e (space group C2)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-06-23 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92819 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 82.580, 27.470, 56.760 |
| Unit cell angles | 90.00, 100.34, 90.00 |
Refinement procedure
| Resolution | 55.840 - 1.290 |
| R-factor | 0.1656 |
| Rwork | 0.164 |
| R-free | 0.19980 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 7av9 |
| RMSD bond length | 0.016 |
| RMSD bond angle | 2.062 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.26) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 55.840 | 55.840 | 1.320 |
| High resolution limit [Å] | 1.290 | 5.770 | 1.290 |
| Rmerge | 0.057 | 0.025 | 0.691 |
| Rmeas | 0.069 | 0.031 | 0.893 |
| Rpim | 0.038 | 0.018 | 0.560 |
| Total number of observations | 92915 | 1134 | 4823 |
| Number of reflections | 31423 | ||
| <I/σ(I)> | 14.2 | 54.3 | 1.4 |
| Completeness [%] | 98.5 | 94.9 | 96.6 |
| Redundancy | 3 | 3 | 2.2 |
| CC(1/2) | 0.998 | 0.998 | 0.495 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5 | 277 | 0.04M potassium phosphate monobasic -- 12% PEG8K |
