5RY9
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z274575916
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-11-22 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91188 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 62.400, 79.010, 88.980 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 59.080 - 1.520 |
| R-factor | 0.1833 |
| Rwork | 0.182 |
| R-free | 0.20660 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6xy7 |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.582 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 62.400 | 62.400 | 1.560 |
| High resolution limit [Å] | 1.520 | 6.800 | 1.520 |
| Rmerge | 0.224 | 0.048 | 1.960 |
| Rmeas | 0.243 | 0.053 | 2.130 |
| Rpim | 0.095 | 0.021 | 0.825 |
| Total number of observations | 446392 | 5434 | 32973 |
| Number of reflections | 68407 | ||
| <I/σ(I)> | 7.8 | 28.2 | 1 |
| Completeness [%] | 100.0 | 100 | 100 |
| Redundancy | 6.5 | 6.1 | 6.6 |
| CC(1/2) | 0.995 | 0.998 | 0.383 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM MES/imidazole, pH 6.5, 20% PEG500 MME, 10% PEG20000 |
