5RY3
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2027158783
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-10-24 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91589 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 62.432, 79.136, 89.221 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 59.200 - 1.500 |
| R-factor | 0.1841 |
| Rwork | 0.183 |
| R-free | 0.20770 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6xy7 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.529 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 59.200 | 59.200 | 1.580 |
| High resolution limit [Å] | 1.500 | 4.730 | 1.500 |
| Rmerge | 0.206 | 0.077 | 1.842 |
| Rmeas | 0.224 | 0.085 | 2.032 |
| Rpim | 0.088 | 0.034 | 0.850 |
| Total number of observations | 462964 | 14756 | 59001 |
| Number of reflections | 71958 | ||
| <I/σ(I)> | 6.2 | 17.3 | 1 |
| Completeness [%] | 100.0 | 99.8 | 100 |
| Redundancy | 6.4 | 5.9 | 5.7 |
| CC(1/2) | 0.993 | 0.994 | 0.419 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM MES/imidazole, pH 6.5, 20% PEG500 MME, 10% PEG20000 |
