5RVW
PanDDA analysis group deposition -- Crystal Structure of DHTKD1 in complex with Z1587220559
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 78.074, 147.025, 87.377 |
Unit cell angles | 90.00, 102.70, 90.00 |
Refinement procedure
Resolution | 85.240 - 1.614 |
R-factor | 0.1647 |
Rwork | 0.164 |
R-free | 0.18870 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6sy1 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.950 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 85.240 | 85.240 | 1.822 |
High resolution limit [Å] | 1.614 | 5.356 | 1.614 |
Rmeas | 0.115 | 0.042 | 0.809 |
Rpim | 0.058 | 0.021 | 0.426 |
Total number of observations | 521455 | 25853 | 23393 |
Number of reflections | 136689 | 6835 | |
<I/σ(I)> | 8.7 | 24.7 | 1.7 |
Completeness [%] | 94.9 | 99.7 | 67.7 |
Redundancy | 3.8 | 3.8 | 3.4 |
CC(1/2) | 0.997 | 0.999 | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.1 | 293 | 0.1M Hepes, 0.1M Magnesium chloride, 20% PEG 6K, 10% ethylene glycol |