5P7T
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 326
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.3 |
| Synchrotron site | BESSY |
| Beamline | 14.3 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2014-01-22 |
| Detector | MAR CCD 165 mm |
| Wavelength(s) | 0.895 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.322, 73.111, 52.928 |
| Unit cell angles | 90.00, 109.60, 90.00 |
Refinement procedure
| Resolution | 22.552 - 1.459 |
| R-factor | 0.1398 |
| Rwork | 0.138 |
| R-free | 0.17030 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.169 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.696 | 1.550 | |
| High resolution limit [Å] | 1.460 | 4.360 | 1.460 |
| Rmerge | 0.068 | 0.020 | 0.651 |
| Rmeas | 0.078 | 0.023 | 0.747 |
| Total number of observations | 237132 | ||
| Number of reflections | 56340 | 2177 | 8963 |
| <I/σ(I)> | 16.21 | 57.63 | 2.24 |
| Completeness [%] | 99.6 | 99.1 | 98.7 |
| Redundancy | 4.208 | ||
| CC(1/2) | 0.999 | 0.999 | 0.739 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 326 with the SMILES code CC1=CC2=CC(O)=CN2C(=O)[C@H]1C#N |






