5P65
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 266
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-07-18 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91841 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.251, 73.046, 52.778 |
| Unit cell angles | 90.00, 109.50, 90.00 |
Refinement procedure
| Resolution | 19.779 - 1.100 |
| R-factor | 0.1294 |
| Rwork | 0.129 |
| R-free | 0.14150 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.194 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 19.779 | 1.170 | |
| High resolution limit [Å] | 1.100 | 3.260 | 1.100 |
| Rmerge | 0.032 | 0.013 | 0.482 |
| Rmeas | 0.037 | 0.016 | 0.568 |
| Total number of observations | 459168 | ||
| Number of reflections | 127054 | 5072 | 19588 |
| <I/σ(I)> | 20.48 | 80.44 | 2.7 |
| Completeness [%] | 97.0 | 98.2 | 93 |
| Redundancy | 3.613 | ||
| CC(1/2) | 1.000 | 1.000 | 0.838 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 266 with the SMILES code CN(C)C1=CC=C(C=N1)C(O)=O |






