5P63
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 264
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-07-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.295, 72.598, 104.178 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.429 - 1.199 |
R-factor | 0.148 |
Rwork | 0.147 |
R-free | 0.16620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.007 |
RMSD bond angle | 1.183 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.322 | 1.270 | |
High resolution limit [Å] | 1.200 | 3.590 | 1.200 |
Rmerge | 0.108 | 0.081 | 0.500 |
Rmeas | 0.118 | 0.088 | 0.542 |
Total number of observations | 738698 | ||
Number of reflections | 108018 | 4341 | 17173 |
<I/σ(I)> | 10.25 | 19.8 | 3.43 |
Completeness [%] | 99.8 | 99.6 | 99.3 |
Redundancy | 6.838 | ||
CC(1/2) | 0.995 | 0.993 | 0.855 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 264 with the SMILES code O=C(NCC1CC1)C1=CC=C(C=C1)N1CCCC1=O |