5P52
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 227
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.3 |
| Synchrotron site | BESSY |
| Beamline | 14.3 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-04-18 |
| Detector | MAR CCD 165 mm |
| Wavelength(s) | 0.8944 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.342, 73.490, 53.026 |
| Unit cell angles | 90.00, 109.56, 90.00 |
Refinement procedure
| Resolution | 29.602 - 1.270 |
| R-factor | 0.1353 |
| Rwork | 0.134 |
| R-free | 0.15790 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.202 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.726 | 1.350 | |
| High resolution limit [Å] | 1.270 | 3.800 | 1.270 |
| Rmerge | 0.048 | 0.023 | 0.483 |
| Rmeas | 0.055 | 0.026 | 0.552 |
| Total number of observations | 357018 | ||
| Number of reflections | 84492 | 3286 | 13403 |
| <I/σ(I)> | 18.82 | 56.38 | 3.22 |
| Completeness [%] | 97.8 | 99.2 | 96.5 |
| Redundancy | 4.225 | ||
| CC(1/2) | 0.999 | 0.999 | 0.834 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 227 with the SMILES code OC(=O)C1=CC=C(CBr)C=C1 |






