5P4G
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 205
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.3 |
| Synchrotron site | BESSY |
| Beamline | 14.3 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2013-04-18 |
| Detector | MAR CCD 165 mm |
| Wavelength(s) | 0.8944 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.200, 72.860, 52.576 |
| Unit cell angles | 90.00, 109.47, 90.00 |
Refinement procedure
| Resolution | 29.355 - 1.159 |
| R-factor | 0.1372 |
| Rwork | 0.136 |
| R-free | 0.15360 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.227 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.615 | 1.230 | |
| High resolution limit [Å] | 1.160 | 3.470 | 1.160 |
| Rmerge | 0.061 | 0.023 | 0.419 |
| Rmeas | 0.071 | 0.026 | 0.511 |
| Total number of observations | 435599 | ||
| Number of reflections | 108943 | 4231 | 15845 |
| <I/σ(I)> | 17.65 | 57.52 | 3.2 |
| Completeness [%] | 98.0 | 99.6 | 88.5 |
| Redundancy | 3.998 | ||
| CC(1/2) | 0.999 | 0.999 | 0.826 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 205 with the SMILES code NC(=N)C1=CSC=C1 |






