5OZL
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 32
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.3 |
| Synchrotron site | BESSY |
| Beamline | 14.3 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2015-07-17 |
| Detector | MAR CCD 165 mm |
| Wavelength(s) | 0.895 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.046, 73.435, 52.579 |
| Unit cell angles | 90.00, 109.07, 90.00 |
Refinement procedure
| Resolution | 28.109 - 1.740 |
| R-factor | 0.1417 |
| Rwork | 0.139 |
| R-free | 0.19470 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.136 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.572 | 1.850 | |
| High resolution limit [Å] | 1.740 | 5.190 | 1.740 |
| Rmerge | 0.077 | 0.027 | 0.486 |
| Rmeas | 0.088 | 0.031 | 0.555 |
| Total number of observations | 140083 | ||
| Number of reflections | 32831 | 1286 | 5186 |
| <I/σ(I)> | 15.29 | 40.33 | 3.21 |
| Completeness [%] | 98.6 | 98.5 | 97.3 |
| Redundancy | 4.266 | ||
| CC(1/2) | 0.998 | 0.999 | 0.856 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 32 with the SMILES code CCOC(=O)C1=CC=C(N)C=C1Cl |






