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5OS9

Structure of the B3 DNA-Binding Domain of NGA1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-06-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameP 21 21 21
Unit cell lengths30.758, 151.179, 47.513
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution75.590 - 1.800
R-factor0.1529
Rwork0.148
R-free0.19480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4lduA
RMSD bond length0.019
RMSD bond angle1.530
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.20)
Phasing softwareMoRDa (1.3.02)
Refinement softwarePHENIX ((1.10_2155))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]75.5901.864
High resolution limit [Å]1.8001.800
Rmerge0.0190.106
Number of reflections393912062
<I/σ(I)>21.816.85
Completeness [%]99.298
Redundancy22
CC(1/2)0.9990.971
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5277Reservoir solution: 0.1 M HEPES-NaOH pH 7.5, 0.2 M potassium sodium tartrate, 1.6 M potassium-sodium phosphate, 5% PEG 4000. Protein concentration: 7.1 mg/ml. Drop: 0.4 microL protein solution + 0.2 microL reservoir solution.

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