5O0L
Deglycosylated Nogo Receptor with native disulfide structure 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 72.909, 38.597, 119.610 |
Unit cell angles | 90.00, 106.20, 90.00 |
Refinement procedure
Resolution | 38.404 - 2.511 |
R-factor | 0.1996 |
Rwork | 0.197 |
R-free | 0.25600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ozn |
RMSD bond length | 0.002 |
RMSD bond angle | 0.521 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.600 | 2.620 |
High resolution limit [Å] | 2.510 | 2.510 |
Number of reflections | 20826 | |
<I/σ(I)> | 12.2 | 3.3 |
Completeness [%] | 94.6 | 89.6 |
Redundancy | 2.8 | 2.6 |
CC(1/2) | 0.992 | 0.564 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 277 | Result of a co-crystallization trial with the Endo-Hf-deglycosylated extracellular domain of mouse MAG (UNIPROT P20917, residues 20-508) in SEC buffer, mixed at equimolar stoichiometry. NgRa was also Endo-Hf-deglycosylated. Crystals were grown in a condition of 0.5 M LiCl, 0.05 M citric acid pH 4.0, 15 % (w/v) PEG6000. |